Index

A

add_spectrum() (ims.dataset.Dataset method) align_ret_time() (ims.dataset.Dataset method)

asymcorr() (ims.dataset.Dataset method) (ims.gcims.Spectrum method)

B

binning() (ims.dataset.Dataset method) (ims.gcims.Spectrum method)

bootstrap() (ims.dataset.Dataset method)

C

clustering (ims.hca.HCA attribute) coefficients (ims.plsda.PLS_DA attribute) (ims.plsr.PLSR attribute) copy() (ims.dataset.Dataset method) (ims.gcims.Spectrum method)

cut_dt() (ims.dataset.Dataset method) (ims.gcims.Spectrum method) cut_rt() (ims.dataset.Dataset method) (ims.gcims.Spectrum method)

D

Dataset (class in ims.dataset)

drop() (ims.dataset.Dataset method)

E

explainded_variance (ims.pca.PCA_Model attribute) explained_variance_ratio (ims.pca.PCA_Model attribute)

export_plot() (ims.gcims.Spectrum method) export_plots() (ims.dataset.Dataset method)

F

find_peaks() (ims.gcims.Spectrum method) fit() (ims.hca.HCA method) (ims.pca.PCA_Model method) (ims.plsda.PLS_DA method) (ims.plsr.PLSR method)

G

get_xy() (ims.dataset.Dataset method)

groupby() (ims.dataset.Dataset method)

H

HCA (class in ims.hca)

I

ims.dataset module ims.gcims module ims.hca module

ims.pca module ims.plsda module ims.plsr module interp_riprel() (ims.dataset.Dataset method)

K

kfold_split() (ims.dataset.Dataset method)

L

leave_one_out() (ims.dataset.Dataset method)

linkage_matrix (ims.hca.HCA attribute) loadings (ims.pca.PCA_Model attribute)

M

mean (ims.pca.PCA_Model attribute) mean() (ims.dataset.Dataset method) module ims.dataset ims.gcims ims.hca ims.pca ims.plsda ims.plsr

P

PCA_Model (class in ims.pca) plot() (ims.dataset.Dataset method) (ims.gcims.Spectrum method) (ims.pca.PCA_Model method) (ims.plsda.PLS_DA method) (ims.plsr.PLSR method) plot_coefficients() (ims.plsda.PLS_DA method) (ims.plsr.PLSR method) plot_dendrogram() (ims.hca.HCA method) plot_loadings() (ims.pca.PCA_Model method) (ims.plsda.PLS_DA method) (ims.plsr.PLSR method)

plot_peaks() (ims.gcims.Spectrum method) plot_persistence() (ims.gcims.Spectrum method) plot_selectivity_ratio() (ims.plsr.PLSR method) plot_vip_scores() (ims.plsda.PLS_DA method) (ims.plsr.PLSR method) PLS_DA (class in ims.plsda) PLSR (class in ims.plsr) predict() (ims.plsda.PLS_DA method) (ims.plsr.PLSR method) preprocessing (ims.dataset.Dataset attribute)

R

R (ims.hca.HCA attribute) read_csv() (ims.dataset.Dataset class method) (ims.gcims.Spectrum class method) read_hdf5() (ims.dataset.Dataset class method) (ims.gcims.Spectrum class method) read_mea() (ims.dataset.Dataset class method) (ims.gcims.Spectrum class method)

read_zip() (ims.dataset.Dataset class method) (ims.gcims.Spectrum class method) resample() (ims.dataset.Dataset method) (ims.gcims.Spectrum method) rip_scaling() (ims.dataset.Dataset method) (ims.gcims.Spectrum method) riprel() (ims.gcims.Spectrum method)

S

sample_indices (ims.dataset.Dataset property) savgol() (ims.dataset.Dataset method) (ims.gcims.Spectrum method) scaling() (ims.dataset.Dataset method) score() (ims.plsda.PLS_DA method) (ims.plsr.PLSR method) scores (ims.pca.PCA_Model attribute)

scree_plot() (ims.pca.PCA_Model method) select() (ims.dataset.Dataset method) shape (ims.gcims.Spectrum property) shuffle_split() (ims.dataset.Dataset method) singular_values (ims.pca.PCA_Model attribute) Spectrum (class in ims.gcims) sub_first_rows() (ims.dataset.Dataset method) (ims.gcims.Spectrum method)

T

test_index (ims.dataset.Dataset attribute) timestamps (ims.dataset.Dataset property) to_hdf5() (ims.dataset.Dataset method) (ims.gcims.Spectrum method) tophat() (ims.dataset.Dataset method) (ims.gcims.Spectrum method)

train_index (ims.dataset.Dataset attribute) train_test_split() (ims.dataset.Dataset method) transform() (ims.plsda.PLS_DA method) (ims.plsr.PLSR method) Tsq_Q_plot() (ims.pca.PCA_Model method)

V

vip_scores (ims.plsda.PLS_DA attribute)

W

watershed_segmentation() (ims.gcims.Spectrum method) wavecompr() (ims.dataset.Dataset method) (ims.gcims.Spectrum method)

weights (ims.dataset.Dataset attribute)

X

x_loadings (ims.plsda.PLS_DA attribute) (ims.plsr.PLSR attribute) x_scores (ims.plsda.PLS_DA attribute) (ims.plsr.PLSR attribute)

x_weights (ims.plsda.PLS_DA attribute) (ims.plsr.PLSR attribute)

Y

y_loadings (ims.plsda.PLS_DA attribute) (ims.plsr.PLSR attribute) y_pred_train (ims.plsda.PLS_DA attribute) (ims.plsr.PLSR attribute)

y_scores (ims.plsda.PLS_DA attribute) (ims.plsr.PLSR attribute) y_weights (ims.plsda.PLS_DA attribute) (ims.plsr.PLSR attribute)